{ "_id": "6a10275aacfb0bcc41c900bc", "Package": "VGAM", "Version": "1.1-14", "Date": "2025-12-02", "Title": "Vector Generalized Linear and Additive Models", "Authors@R": "c(person(\"Thomas\", \"Yee\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9970-3907\"),\nemail = \"t.yee@auckland.ac.nz\"),\nperson(\"Cleve\", \"Moler\", role = \"ctb\",\ncomment = \"LINPACK routines in src\"))", "Author": "Thomas Yee [aut, cre] (ORCID:\n), Cleve Moler [ctb]\n(LINPACK routines in src)", "Maintainer": "Thomas Yee ", "Description": "An implementation of about 6 major classes of statistical\nregression models. The central algorithm is Fisher scoring and\niterative reweighted least squares. At the heart of this\npackage are the vector generalized linear and additive model\n(VGLM/VGAM) classes. VGLMs can be loosely thought of as\nmultivariate GLMs. VGAMs are data-driven VGLMs that use\nsmoothing. The book \"Vector Generalized Linear and Additive\nModels: With an Implementation in R\" (Yee, 2015)\n gives details of the\nstatistical framework and the package. Currently only\nfixed-effects models are implemented. Many (100+) models and\ndistributions are estimated by maximum likelihood estimation\n(MLE) or penalized MLE. The other classes are RR-VGLMs\n(reduced-rank VGLMs), quadratic RR-VGLMs, doubly constrained\nRR-VGLMs, quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs\n(row-column interaction models)---these classes perform\nconstrained and unconstrained quadratic ordination (CQO/UQO)\nmodels in ecology, as well as constrained additive ordination\n(CAO). Hauck-Donner effect detection is implemented. Note that\nthese functions are subject to change; see the NEWS and\nChangeLog files for latest changes.", "License": "GPL-3", "URL": "https://www.stat.auckland.ac.nz/~yee/VGAM/", "NeedsCompilation": "yes", "BuildVignettes": "yes", "LazyLoad": "yes", "LazyData": "yes", "Packaged": { "Date": "2026-05-13 08:29:42 UTC", "User": "root" }, "Repository": "https://tyee001.r-universe.dev", "Date/Publication": "2025-12-04 06:49:43 UTC", "RemoteUrl": "https://github.com/cran/VGAM", "RemoteRef": "HEAD", "RemoteSha": "2c0cbb3623638c6a2832ff797b78400b0d322938", "MD5sum": "29fd0c5dcadc09bb17b2b3372b7c2ea0", "_user": "tyee001", "_type": "src", "_file": "VGAM_1.1-14.tar.gz", "_fileid": "cd8586a8b583cc6660f746d5218af8b1017d7a4d8d8d3328a752adbc8c04aa69", "_filesize": 5436509, "_sha256": "cd8586a8b583cc6660f746d5218af8b1017d7a4d8d8d3328a752adbc8c04aa69", "_created": "2026-05-13T08:29:42.000Z", "_published": "2026-05-22T09:52:26.776Z", "_distro": "noble", "_jobs": [ { "job": 77356364112, "time": 298, 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Time Effects", "topics": [ "aux.posbernoulli.t" ] }, { "page": "backPain", "title": "Data on Back Pain Prognosis, from Anderson (1984)", "topics": [ "backPain", "backPain2" ] }, { "page": "beggs", "title": "Bacon and Eggs Data", "topics": [ "beggs" ] }, { "page": "bell", "title": "The Bell Series of Integers", "topics": [ "bell" ] }, { "page": "benfUC", "title": "Benford's Distribution", "topics": [ "Benford", "dbenf", "pbenf", "qbenf", "rbenf" ] }, { "page": "beniniUC", "title": "The Benini Distribution", "topics": [ "Benini", "dbenini", "pbenini", "qbenini", "rbenini" ] }, { "page": "benini", "title": "Benini Distribution Family Function", "topics": [ "benini1" ] }, { "page": "betabinomUC", "title": "The Beta-Binomial Distribution", "topics": [ "Betabinom", "dbetabinom", "dbetabinom.ab", "dzoibetabinom", "dzoibetabinom.ab", "pbetabinom", "pbetabinom.ab", "pzoibetabinom", "pzoibetabinom.ab", "rbetabinom", "rbetabinom.ab", "rzoibetabinom", "rzoibetabinom.ab" ] }, { "page": "betabinomial", "title": "Beta-binomial Distribution Family Function", "topics": [ "betabinomial" ] }, { "page": "betabinomial.rho", "title": "Beta-binomial Distribution Family Function (with known rho)", "topics": [ "betabinomial.rho" ] }, { "page": "betabinomialff", "title": "Beta-binomial Distribution Family Function", "topics": [ "betabinomialff" ] }, { "page": "betaff", "title": "The Two-parameter Beta Distribution Family Function", "topics": [ "betaff" ] }, { "page": "betageomUC", "title": "The Beta-Geometric Distribution", "topics": [ "Betageom", "dbetageom", "pbetageom", "rbetageom" ] }, { "page": "betageometric", "title": "Beta-geometric Distribution Family Function", "topics": [ "betageometric" ] }, { "page": "betaII", "title": "Beta Distribution of the Second Kind", "topics": [ "betaII" ] }, { "page": "betanormUC", "title": "The Beta-Normal Distribution", "topics": [ "Betanorm", "dbetanorm", "pbetanorm", "qbetanorm", "rbetanorm" ] }, { "page": "betaprime", "title": "The Beta-Prime Distribution", "topics": [ "betaprime" ] }, { "page": "betaR", "title": "The Two-parameter Beta Distribution Family Function", "topics": [ "betaR" ] }, { "page": "biamhcop", "title": "Ali-Mikhail-Haq Distribution Family Function", "topics": [ "biamhcop" ] }, { "page": "biamhcopUC", "title": "Ali-Mikhail-Haq Bivariate Distribution", "topics": [ "Biamhcop", "dbiamhcop", "pbiamhcop", "rbiamhcop" ] }, { "page": "biclaytoncop", "title": "Clayton Copula (Bivariate) Family Function", "topics": [ "biclaytoncop" ] }, { "page": "biclaytoncopUC", "title": "Clayton Copula (Bivariate) Distribution", "topics": [ "dbiclaytoncop", "rbiclaytoncop" ] }, { "page": "BICvlm", "title": "Bayesian Information Criterion", "topics": [ "BICvgam", "BICvlm" ] }, { "page": "bifgmcop", "title": "Farlie-Gumbel-Morgenstern's Bivariate Distribution Family Function", "topics": [ "bifgmcop" ] }, { "page": "bifgmcopUC", "title": "Farlie-Gumbel-Morgenstern's Bivariate Distribution", "topics": [ "Bifgmcop", "dbifgmcop", "pbifgmcop", "rbifgmcop" ] }, { "page": "bifgmexp", "title": "Bivariate Farlie-Gumbel-Morgenstern Exponential Distribution Family Function", "topics": [ "bifgmexp" ] }, { "page": "bifrankcop", "title": "Frank's Bivariate Distribution Family Function", "topics": [ "bifrankcop" ] }, { "page": "bigumbelIexp", "title": "Gumbel's Type I Bivariate Distribution Family Function", "topics": [ "bigumbelIexp" ] }, { "page": "bilogisUC", "title": "Bivariate Logistic Distribution", "topics": [ "bilogis", "dbilogis", "pbilogis", "rbilogis" ] }, { "page": "bilogistic", "title": "Bivariate Logistic Distribution Family Function", "topics": [ "bilogistic" ] }, { "page": "binom2.or", "title": "Bivariate Binary Regression with an Odds Ratio (Family Function)", "topics": [ "binom2.or" ] }, { "page": "binom2.orUC", "title": "Bivariate Odds Ratio Model", "topics": [ "Binom2.or", "dbinom2.or", "rbinom2.or" ] }, { "page": "binom2.rho", "title": "Bivariate Probit Regression", "topics": [ 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}, { "page": "biplackettcopUC", "title": "Plackett's Bivariate Copula", "topics": [ "Biplackett", "dbiplackcop", "pbiplackcop", "rbiplackcop" ] }, { "page": "biplackettcop", "title": "Plackett's Bivariate Copula Family Function", "topics": [ "biplackettcop" ] }, { "page": "biplot-methods", "title": "Biplot of Constrained Regression Models", "topics": [ "biplot,qrrvglm-method", "biplot,rrvglm-method" ] }, { "page": "bisa", "title": "Birnbaum-Saunders Regression Family Function", "topics": [ "bisa" ] }, { "page": "bisaUC", "title": "The Birnbaum-Saunders Distribution", "topics": [ "Bisa", "dbisa", "pbisa", "qbisa", "rbisa" ] }, { "page": "bistudentt", "title": "Bivariate Student-t Family Function", "topics": [ "bistudentt" ] }, { "page": "bistudenttUC", "title": "Bivariate Student-t Distribution Density Function", "topics": [ "Bistudentt", "dbistudentt" ] }, { "page": "bmi.nz", "title": "Body Mass Index of New Zealand Adults Data", "topics": [ "bmi.nz" ] }, { "page": "borel.tanner", "title": "Borel-Tanner Distribution Family Function", "topics": [ "borel.tanner" ] }, { "page": "bortUC", "title": "The Borel-Tanner Distribution", "topics": [ "Bort", "dbort", "rbort" ] }, { "page": "brat", "title": "Bradley Terry Model", "topics": [ "brat" ] }, { "page": "bratUC", "title": "Inputting Data to fit a Bradley Terry Model", "topics": [ "Brat" ] }, { "page": "bratt", "title": "Bradley Terry Model With Ties", "topics": [ "bratt" ] }, { "page": "budworm", "title": "Western Spuce Budworm", "topics": [ "budworm" ] }, { "page": "calibrate", "title": "Model Calibrations", "topics": [ "calibrate" ] }, { "page": "calibrate-methods", "title": "Calibration for Constrained Regression Models", "topics": [ "calibrate,Coef.qrrvglm-method", "calibrate,qrrvglm-method", "calibrate,rrvgam-method", "calibrate,rrvglm-method" ] }, { "page": "calibrate.qrrvglm", "title": "Calibration for CQO and CAO models", "topics": [ "calibrate.qrrvglm" ] }, { "page": "calibrate.qrrvglm.control", "title": "Control Function for CQO/CAO Calibration", "topics": [ "calibrate.qrrvglm.control" ] }, { "page": "calibrate.rrvglm", "title": "Calibration for CLO models (RR-VGLMs)", "topics": [ "calibrate.rrvglm" ] }, { "page": "calibrate.rrvglm.control", "title": "Control Function for CLO (RR-VGLM) Calibration", "topics": [ "calibrate.rrvglm.control" ] }, { "page": "cao", "title": "Fitting Constrained Additive Ordination (CAO)", "concept": [ "Constrained additive ordination" ], "topics": [ "cao" ] }, { "page": "cao.control", "title": "Control Function for RR-VGAMs (CAO)", "concept": [ "Constrained additive ordination" ], "topics": [ "cao.control" ] }, { "page": "cardUC", "title": "Cardioid Distribution", "topics": [ "Card", "dcard", "dcard2", "pcard", "pcard2", "qcard", "qcard2", "rcard", "rcard2" ] }, { "page": "cardioid", "title": "Cardioid Distribution Family Function", "topics": [ "cardioid", "cardioid2" ] }, { "page": "cauchitlink", "title": "Cauchit Link Function", "topics": [ "cauchitlink" ] }, { "page": "cauchy", "title": "Cauchy Distribution Family Function", "topics": [ "cauchy", "cauchy1" ] }, { "page": "cdf.lmscreg", "title": "Cumulative Distribution Function for LMS Quantile Regression", "topics": [ "cdf.lmscreg" ] }, { "page": "cens.gumbel", "title": "Censored Gumbel Distribution", "topics": [ "cens.gumbel" ] }, { "page": "cens.normal", "title": "Censored Normal Distribution", "topics": [ "cennormal", "cens.normal" ] }, { "page": "cens.poisson", "title": "Censored Poisson Family Function", "topics": [ "cens.poisson" ] }, { "page": "cfibrosis", "title": "Cystic Fibrosis Data", "topics": [ "cfibrosis" ] }, { "page": "cgo", "title": "Redirects the user to cqo", "topics": [ "cgo" ] }, { "page": "chest.nz", "title": "Chest Pain in NZ Adults Data", "topics": [ "chest.nz" ] }, { "page": "chinese.nz", "title": "Chinese Population in New Zealand 1867-2001 Data", "topics": [ "chinese.nz" ] }, { "page": "chisq", "title": "Chi-squared and Chi Distributions", "topics": [ "chisq" ] }, { "page": "clo", "title": "Redirects the User to rrvglm()", "topics": [ "clo" ] }, { "page": "clogloglink", "title": "Complementary Log-log Link Function", "topics": [ "cloglink", "clogloglink" ] }, { "page": "CM.equid", "title": "Constraint Matrices for Symmetry, Order, Parallelism, etc.", "concept": [ "Constraint matrices" ], "topics": [ "CM.equid", "CM.free", "CM.ones", "CM.qlogis", "CM.qnorm", "CM.symm0", "CM.symm1" ] }, { "page": "coalminers", "title": "Breathlessness and Wheeze Amongst Coalminers Data", "topics": [ "coalminers" ] }, { "page": "Coef", "title": "Computes Model Coefficients and Quantities", "topics": [ "Coef" ] }, { "page": "Coef.qrrvglm", "title": "Returns Important Matrices etc. of a QO Object", "topics": [ "Coef.qrrvglm" ] }, { "page": "Coef.qrrvglm-class", "title": "Class ``Coef.qrrvglm''", "topics": [ "Coef.qrrvglm-class" ] }, { "page": "Coef.rrvglm", "title": "Returns Important Matrices etc. of a RR-VGLM Object", "topics": [ "Coef.rrvglm" ] }, { "page": "Coef.rrvglm-class", "title": "Class ``Coef.rrvglm''", "topics": [ "Coef.rrvglm-class" ] }, { "page": "Coef.vlm", "title": "Extract Model Coefficients for VLM Objects", "topics": [ "Coef.vlm" ] }, { "page": "coefvgam", "title": "Extract Model Coefficients of a vgam() Object", "topics": [ "coef,vgam-method", "coefficients,vgam-method", "coefvgam" ] }, { "page": "coefvlm", "title": "Extract Model Coefficients", "topics": [ "coefvlm" ] }, { "page": "CommonVGAMffArguments", "title": "Common VGAM Family Function Arguments", "topics": [ "CommonVGAMffArguments", "TypicalVGAMfamilyFunction" ] }, { "page": "concoef", "title": "Extract Model Constrained/Canonical Coefficients", "topics": [ "concoef" ] }, { "page": "concoef-methods", "title": "Constrained (Canonical) Coefficients", "topics": [ "concoef,cao-method", "concoef,Coef.cao-method", "concoef,Coef.qrrvglm-method", "concoef,Coef.rrvglm-method", "concoef,qrrvglm-method", "concoef,rrvglm-method", "concoef-method" ] }, { "page": "confintvglm", "title": "Confidence Intervals for Parameters of VGLMs", "topics": [ "confintrrvglm", "confintvgam", "confintvglm" ] }, { "page": "constraints", "title": "Constraint Matrices", "concept": [ "Constraint matrices" ], "topics": [ "constraints", "constraints.vlm" ] }, { "page": "cops", "title": "Centre of the Parameter Space", "topics": [ "cops", "cops,vglm-method", "copsvglm" ] }, { "page": "cops3", "title": "Centre of the Parameter Space for GLMs", "topics": [ "cops3", "cops3.default", "cops3.glm" ] }, { "page": "copsd", "title": "Centre of the Parameter Space Distance", "topics": [ "copsd", "copsd,vglm-method", "copsdvglm" ] }, { "page": "copsd3", "title": "Centre of the Parameter Space Distance for GLMs", "topics": [ "copsd3", "copsd3.default", "copsd3.glm" ] }, { "page": "corbet", "title": "Corbet's Butterfly Data", "topics": [ "corbet" ] }, { "page": "cqo", "title": "Fitting Constrained Quadratic Ordination (CQO)", "topics": [ "cqo" ] }, { "page": "crashes", "title": "Crashes on New Zealand Roads in 2009", "topics": [ "alclevels", "alcoff", "crashbc", "crashf", "crashi", "crashmc", "crashp", "crashtr" ] }, { "page": "cratio", "title": "Ordinal Regression with Continuation Ratios", "topics": [ "cratio" ] }, { "page": "cumulative", "title": "Ordinal Regression with Cumulative Probabilities", "topics": [ "cumulative" ] }, { "page": "dagum", "title": "Dagum Distribution Family Function", "topics": [ "dagum" ] }, { "page": "dagumUC", "title": "The Dagum Distribution", "topics": [ "Dagum", "ddagum", "pdagum", "qdagum", "rdagum" ] }, { "page": "AR1UC", "title": "The AR-1 Autoregressive Process", "topics": [ "dAR1" ] }, { "page": "deermice", "title": "Captures of Peromyscus maniculatus (Also Known as Deer Mice).", "topics": [ "deermice" ] }, { "page": "deplot.lmscreg", "title": "Density Plot for LMS Quantile Regression", "topics": [ "deplot.lmscreg" ] }, { "page": "depvar", "title": "Dependent (Response) Variable Extracted", "topics": [ "depvar" ] }, { "page": "extlogF.UC", "title": "Extended log-F Distribution", "topics": [ "dextlogF" ] }, { "page": "df.residual", "title": "Residual Degrees-of-Freedom", "topics": [ "df.residual", "df.residual_vlm" ] }, { "page": "dgaitdplot", "title": "Plotting the GAITD Combo Density", "topics": [ "dgaitdplot" ] }, { "page": "huberUC", "title": "Huber's Least Favourable Distribution", "topics": [ "dhuber", "edhuber", "phuber", "qhuber", "rhuber" ] }, { "page": "diffzeta", "title": "Differenced Zeta Distribution Family Function", "topics": [ "diffzeta" ] }, { "page": "diffzetaUC", "title": "Differenced Zeta Distribution", "topics": [ "ddiffzeta", "Diffzeta", "pdiffzeta", "qdiffzeta", "rdiffzeta" ] }, { "page": "dirichlet", "title": "Fitting a Dirichlet Distribution", "topics": [ "dirichlet" ] }, { "page": "dirmul.old", "title": "Fitting a Dirichlet-Multinomial Distribution", "topics": [ "dirmul.old" ] }, { "page": "dirmultinomial", "title": "Fitting a Dirichlet-Multinomial Distribution", "topics": [ "dirmultinomial" ] }, { "page": "logF.UC", "title": "log F Distribution", "topics": [ "dlogF" ] }, { "page": "double.cens.normal", "title": "Univariate Normal Distribution with Double Censoring", "topics": [ "double.cens.normal" ] }, { "page": "double.expbinomial", "title": "Double Exponential Binomial Distribution Family Function", "topics": [ "double.expbinomial" ] }, { "page": "ducklings", "title": "Relative Frequencies of Serum Proteins in White Pekin Ducklings", "topics": [ "ducklings" ] }, { "page": "eCDF", "title": "Empirical Cumulative Distribution Function", "topics": [ "eCDF", "eCDF.vglm" ] }, { "page": "enzyme", "title": "Enzyme Data", "topics": [ "enzyme" ] }, { "page": "erf", "title": "Error Function, and variants", "topics": [ "erf", "erfc" ] }, { "page": "erlang", "title": "Erlang Distribution", "topics": [ "erlang" ] }, { "page": "eexpUC", "title": "Expectiles of the Exponential Distribution", "topics": [ "deexp", "eexp", "Expectiles-Exponential", "peexp", "qeexp", "reexp" ] }, { "page": "enormUC", "title": "Expectiles of the Normal Distribution", "topics": [ "denorm", "enorm", "Expectiles-Normal", "penorm", "qenorm", "renorm" ] }, { "page": "sc.t2UC", "title": "Expectiles/Quantiles of the Scaled Student t Distribution with 2 Df", "topics": [ "dsc.t2", "Expectiles-sc.t2", "psc.t2", "qsc.t2", "rsc.t2" ] }, { "page": "eunifUC", "title": "Expectiles of the Uniform Distribution", "topics": [ "deunif", "eunif", "Expectiles-Uniform", "peunif", "qeunif", "reunif" ] }, { "page": "expexpff", "title": "Exponentiated Exponential Distribution", "topics": [ "expexpff" ] }, { "page": "expexpff1", "title": "Exponentiated Exponential Distribution", "topics": [ "expexpff1" ] }, { "page": "expgeometricUC", "title": "The Exponential Geometric Distribution", "topics": [ "dexpgeom", "expgeom", "pexpgeom", "qexpgeom", "rexpgeom" ] }, { "page": "expgeometric", "title": "Exponential Geometric Distribution Family Function", "topics": [ "expgeometric" ] }, { "page": "expint3", "title": "The Exponential Integral and Variants", "topics": [ "expexpint", "expint", "expint.E1" ] }, { "page": "explink", "title": "Exponential Link Function", "topics": [ "explink" ] }, { "page": "explogUC", "title": "The Exponential Logarithmic Distribution", "topics": [ "dexplog", "explog", "pexplog", "qexplog", "rexplog" ] }, { "page": "explogff", "title": "Exponential Logarithmic Distribution Family Function", "topics": [ "explogff" ] }, { "page": "exponential", "title": "Exponential Distribution", "topics": [ "exponential" ] }, { "page": "exppoissonUC", "title": "The Exponential Poisson Distribution", "topics": [ "dexppois", "exppois", "pexppois", "qexppois", "rexppois" ] }, { "page": "exppoisson", "title": "Exponential Poisson Distribution Family Function", "topics": [ "exppoisson" ] }, { "page": "extbetabinomUC", "title": "The Extended Beta-Binomial Distribution", "topics": [ "dextbetabinom", "Extbetabinom", "pextbetabinom", "qextbetabinom", "rextbetabinom" ] }, { "page": "extbetabinomial", "title": "Extended Beta-binomial Distribution Family Function", "topics": [ "extbetabinomial" ] }, { "page": "extlogF1", "title": "Extended log-F Distribution Family Function", "topics": [ "extlogF1" ] }, { "page": "eyed", "title": "Eye Disease Data: Diabetic Retinopathy", "topics": [ "eyed" ] }, { "page": "familyname", "title": "Family Function Name", "topics": [ "familyname", "familyname.vglmff", "familyname.vlm" ] }, { "page": "fbeetle", "title": "Mortality of Flour Beetles from Carbon Disulphide", "topics": [ "fbeetle" ] }, { "page": "felix", "title": "Felix Distribution Family Function", "topics": [ "felix" ] }, { "page": "felixUC", "title": "The Felix Distribution", "topics": [ "dfelix", "Felix" ] }, { "page": "fff", "title": "F Distribution Family Function", "topics": [ "fff" ] }, { "page": "fill1", "title": "Creates a Matrix of Appropriate Dimension", "topics": [ "fill1" ] }, { "page": "finney44", "title": "Toxicity trial for insects", "topics": [ "finney44" ] }, { "page": "fisherzlink", "title": "Fisher's Z Link Function", "topics": [ "fisherzlink" ] }, { "page": "fisk", "title": "Fisk Distribution family function", "topics": [ "fisk" ] }, { "page": "fiskUC", "title": "The Fisk Distribution", "topics": [ "dfisk", "Fisk", "pfisk", "qfisk", "rfisk" ] }, { "page": "fittedvlm", "title": "Fitted Values of a VLM object", "topics": [ "fitted.values.vlm", "fittedvlm" ] }, { "page": "fix.crossing", "title": "Fixing a Quantile Regression having Crossing", "topics": [ "fix.crossing", "fix.crossing.vglm" ] }, { "page": "foldnormUC", "title": "The Folded-Normal Distribution", "topics": [ "dfoldnorm", "Foldnorm", "pfoldnorm", "qfoldnorm", "rfoldnorm" ] }, { "page": "foldnormal", "title": "Folded Normal Distribution Family Function", "topics": [ "foldnormal" ] }, { "page": "formulavlm", "title": "Model Formulae and Term Names for VGLMs", "topics": [ "formula.vlm", "formulavlm", "term.names", "term.namesvlm" ] }, { "page": "bifrankcopUC", "title": "Frank's Bivariate Distribution", "topics": [ "dbifrankcop", "Frank", "pbifrankcop", "rbifrankcop" ] }, { "page": "frechet", "title": "Frechet Distribution Family Function", "topics": [ "frechet" ] }, { "page": "frechetUC", "title": "The Frechet Distribution", "topics": [ "dfrechet", "Frechet", "pfrechet", "qfrechet", "rfrechet" ] }, { "page": "freund61", "title": "Freund's (1961) Bivariate Extension of the Exponential Distribution", "topics": [ "freund61" ] }, { "page": "gaitdbinomUC", "title": "Generally Altered, Inflated, Truncated and Deflated Binomial Distribution", "topics": [ "dgaitdbinom", "Gaitdbinom", "pgaitdbinom", "qgaitdbinom", "rgaitdbinom" ] }, { "page": "gaitdlog", "title": "Generally Altered, Inflated, Truncated and Deflated Logarithmic Regression", "topics": [ "gaitdlog" ] }, { "page": "gaitdlogUC", "title": "Generally Altered, Inflated, Truncated and Deflated Logarithmic Distribution", "topics": [ "dgaitdlog", "Gaitdlog", "pgaitdlog", "qgaitdlog", "rgaitdlog" ] }, { "page": "gaitdnbinomUC", "title": "Generally Altered, Inflated, Truncated and Deflated Negative Binomial Distribution", "topics": [ "dgaitdnbinom", "Gaitdnbinom", "pgaitdnbinom", "qgaitdnbinom", "rgaitdnbinom" ] }, { "page": "gaitdnbinomial", "title": "Generally Altered, Inflated, Truncated and Deflated Negative Binomial Regression", "topics": [ "gaitdnbinomial" ] }, { "page": "gaitdpoisUC", "title": "Generally Altered, Inflated, Truncated and Deflated Poisson Distribution", "topics": [ "dgaitdpois", "Gaitdpois", "pgaitdpois", "qgaitdpois", "rgaitdpois" ] }, { "page": "gaitdpoisson", "title": "Generally Altered, Inflated, Truncated and Deflated Poisson Regression", "topics": [ "gaitdpoisson" ] }, { "page": "gaitdzeta", "title": "Generally Altered, Inflated, Truncated and Deflated Zeta Regression", "topics": [ "gaitdzeta" ] }, { "page": "gaitdzetaUC", "title": "Generally Altered, Inflated and Truncated and Deflated Zeta Distribution", "topics": [ "dgaitdzeta", "Gaitdzeta", "pgaitdzeta", "qgaitdzeta", "rgaitdzeta" ] }, { "page": "gamma1", "title": "1-parameter Gamma Regression Family Function", "topics": [ "gamma1" ] }, { "page": "gamma2", "title": "2-parameter Gamma Regression Family Function", "topics": [ "gamma2" ] }, { "page": "gammaff.mm", "title": "Multivariate Gamma Family Function: Mathai and Moschopoulos (1992)", "topics": [ "gammaff.mm" ] }, { "page": "gammahyperbola", "title": "Gamma Hyperbola Bivariate Distribution", "topics": [ "gammahyperbola" ] }, { "page": "gammaR", "title": "2-parameter Gamma Regression Family Function", "topics": [ "gammaR" ] }, { "page": "garma", "title": "GARMA (Generalized Autoregressive Moving-Average) Models", "topics": [ "garma" ] }, { "page": "genbetaII", "title": "Generalized Beta Distribution of the Second Kind", "topics": [ "genbetaII" ] }, { "page": "genbetaIIUC", "title": "The Generalized Beta II Distribution", "topics": [ "dgenbetaII", "GenbetaII" ] }, { "page": "gengamma", "title": "Generalized Gamma distribution family function", "topics": [ "gengamma.stacy" ] }, { "page": "gengammaUC", "title": "Generalized Gamma Distribution", "topics": [ "dgengamma.stacy", "gengammaUC", "pgengamma.stacy", "qgengamma.stacy", "rgengamma.stacy" ] }, { "page": "genpois0UC", "title": "Generalized Poisson Distribution (Original Parameterization)", "topics": [ "dgenpois0", "Genpois0", "pgenpois0", "qgenpois0", "rgenpois0" ] }, { "page": "genpois1UC", "title": "Generalized Poisson Distribution (GP-1 and GP-2 Parameterizations of the Mean)", "topics": [ "dgenpois1", "dgenpois2", "Genpois1", "Genpois2", "pgenpois1", "pgenpois2", "qgenpois1", "qgenpois2", "rgenpois1", "rgenpois2" ] }, { "page": "genpoisson0", "title": "Generalized Poisson Regression (Original Parameterization)", "topics": [ "genpoisson0" ] }, { "page": "genpoisson1", "title": "Generalized Poisson Regression (GP-1 Parameterization)", "topics": [ "genpoisson1" ] }, { "page": "genpoisson2", "title": "Generalized Poisson Regression (GP-2 Parameterization)", "topics": [ "genpoisson2" ] }, { "page": "genrayleighUC", "title": "The Generalized Rayleigh Distribution", "topics": [ "dgenray", "genray", "pgenray", "qgenray", "rgenray" ] }, { "page": "genrayleigh", "title": "Generalized Rayleigh Distribution Family Function", "topics": [ "genrayleigh" ] }, { "page": "gensh", "title": "Generalized Secant Hyperbolic Regression Family Function", "topics": [ "gensh" ] }, { "page": "genshUC", "title": "Generalized Secant Hyperbolic Distribution", "topics": [ "dgensh", "Gensh", "pgensh", "qgensh", "rgensh" ] }, { "page": "geometric", "title": "Geometric (Truncated and Untruncated) Distributions", "topics": [ "geometric", "truncgeometric" ] }, { "page": "get.smart", "title": "Retrieve One Component of ``.smart.prediction''", "topics": [ "get.smart" ] }, { "page": "get.smart.prediction", "title": "Retrieves ``.smart.prediction''", "topics": [ "get.smart.prediction" ] }, { "page": "gev", "title": "Generalized Extreme Value Regression Family Function", "topics": [ "gev", "gevff" ] }, { "page": "gevUC", "title": "The Generalized Extreme Value Distribution", "topics": [ "dgev", "gevUC", "pgev", "qgev", "rgev" ] }, { "page": "gew", "title": "General Electric and Westinghouse Data", "topics": [ "gew" ] }, { "page": "goffset", "title": "GAITD Offset for the GTE Method", "topics": [ "goffset" ] }, { "page": "gompertz", "title": "Gompertz Regression Family Function", "topics": [ "gompertz" ] }, { "page": "gompertzUC", "title": "Gompertz Distribution", "topics": [ "dgompertz", "Gompertz", "pgompertz", "qgompertz", "rgompertz" ] }, { "page": "gpd", "title": "Generalized Pareto Distribution Regression Family Function", "topics": [ "gpd" ] }, { "page": "gpdUC", "title": "The Generalized Pareto Distribution", "topics": [ "dgpd", "gpdUC", "pgpd", "qgpd", "rgpd" ] }, { "page": "grain.us", "title": "Grain Prices Data in USA", "topics": [ "grain.us" ] }, { "page": "grc", "title": "Row-Column Interaction Models including Goodman's RC Association Model and Unconstrained Quadratic Ordination", "topics": [ "grc", "rcim", "uqo" ] }, { "page": "gumbel", "title": "Gumbel Regression Family Function", "topics": [ "gumbel", "gumbelff" ] }, { "page": "gumbelIIUC", "title": "The Gumbel-II Distribution", "topics": [ "dgumbelII", "Gumbel-II", "pgumbelII", "qgumbelII", "rgumbelII" ] }, { "page": "gumbelII", "title": "Gumbel-II Regression Family Function", "topics": [ "gumbelII" ] }, { "page": "gumbelUC", "title": "The Gumbel Distribution", "topics": [ "dgumbel", "pgumbel", "qgumbel", "rgumbel" ] }, { "page": "guplot", "title": "Gumbel Plot", "topics": [ "guplot", "guplot.default", "guplot.vlm" ] }, { "page": "has.intercept", "title": "Has a Fitted VGLM Got an Intercept Term?", "topics": [ "has.intercept", "has.interceptvlm" ] }, { "page": "hatvalues", "title": "Hat Values and Regression Deletion Diagnostics", "concept": [ "DFBETAs" ], "topics": [ "dfbeta", "dfbetavlm", "hatplot", "hatplot.vlm", "hatvalues", "hatvaluesvlm" ] }, { "page": "hdeff", "title": "Hauck-Donner Effects: A Detection Test for Wald Tests", "concept": [ "Hauck--Donner effect" ], "topics": [ "hdeff", "hdeff.matrix", "hdeff.numeric", "hdeff.vglm" ] }, { "page": "hdeffsev", "title": "Hauck-Donner Effect: Severity Measures", "concept": [ "Hauck--Donner effect" ], "topics": [ "hdeffsev" ] }, { "page": "hdeffsev2", "title": "Hauck-Donner Effect: Severity Measures", "concept": [ "Hauck--Donner effect" ], "topics": [ "hdeffsev0", "hdeffsev2" ] }, { "page": "hormone", "title": "Hormone Assay Data", "topics": [ "hormone" ] }, { "page": "hspider", "title": "Hunting Spider Data", "topics": [ "hspider" ] }, { "page": "huber", "title": "Huber's Least Favourable Distribution Family Function", "topics": [ "huber1", "huber2" ] }, { "page": "Huggins89.t1", "title": "Table 1 of Huggins (1989)", "topics": [ "Huggins89.t1", "Huggins89table1" ] }, { "page": "hunua", "title": "Hunua Ranges Data", "topics": [ "hunua" ] }, { "page": "hurea", "title": "Husler-Reiss Angular Surface Distribution Family Function", "topics": [ "hurea" ] }, { "page": "hureaUC", "title": "The Husler-Reiss Angular Surface Distribution", "topics": [ "dhurea", "Hurea" ] }, { "page": "hyperg", "title": "Hypergeometric Family Function", "topics": [ "hyperg" ] }, { "page": "hypersecant", "title": "Hyperbolic Secant Regression Family Function", "topics": [ "hypersecant", "hypersecant01", "nef.hs" ] }, { "page": "hzeta", "title": "Haight's Zeta Family Function", "topics": [ "hzeta" ] }, { "page": "hzetaUC", "title": "Haight's Zeta Distribution", "topics": [ "dhzeta", "Hzeta", "phzeta", "qhzeta", "rhzeta" ] }, { "page": "iam", "title": "Index from Array to Matrix", "topics": [ "iam" ] }, { "page": "identitylink", "title": "Identity Link Function", "topics": [ "identitylink", "negidentitylink" ] }, { "page": "Influence", "title": "Influence Function (S4 generic) of a Fitted Model", "topics": [ "Influence", "Influence.vglm" ] }, { "page": "inv.binomial", "title": "Inverse Binomial Distribution Family Function", "topics": [ "inv.binomial" ] }, { "page": "Inv.gaussian", "title": "The Inverse Gaussian Distribution", "topics": [ "dinv.gaussian", "Inv.gaussian", "pinv.gaussian", "rinv.gaussian" ] }, { "page": "inv.gaussianff", "title": "Inverse Gaussian Distribution Family Function", "topics": [ "inv.gaussianff" ] }, { "page": "inv.lomax", "title": "Inverse Lomax Distribution Family Function", "topics": [ "inv.lomax" ] }, { "page": "inv.lomaxUC", "title": "The Inverse Lomax Distribution", "topics": [ "dinv.lomax", "Inv.lomax", "pinv.lomax", "qinv.lomax", "rinv.lomax" ] }, { "page": "inv.paralogistic", "title": "Inverse Paralogistic Distribution Family Function", "topics": [ "inv.paralogistic" ] }, { "page": "inv.paralogisticUC", "title": "The Inverse Paralogistic Distribution", "topics": [ "dinv.paralogistic", "Inv.paralogistic", "pinv.paralogistic", "qinv.paralogistic", "rinv.paralogistic" ] }, { "page": "is.buggy", "title": "Does the Fitted Object Suffer from a Known Bug?", "topics": [ "is.buggy", "is.buggy.vlm" ] }, { "page": "is.crossing", "title": "Quantile Crossing Detection", "topics": [ "is.crossing", "is.crossing.vglm" ] }, { "page": "is.parallel", "title": "Parallelism Constraint Matrices", "topics": [ "is.parallel", "is.parallel.matrix", "is.parallel.vglm" ] }, { "page": "is.smart", "title": "Test For a Smart Object", "topics": [ "is.smart" ] }, { "page": "is.zero", "title": "Zero Constraint Matrices", "topics": [ "is.zero", "is.zero.matrix", "is.zero.vglm" ] }, { "page": "kendall.tau", "title": "Kendall's Tau Statistic", "topics": [ "kendall.tau" ] }, { "page": "KLDvglm", "title": "Kullback-Leibler Divergence", "topics": [ "KLD", "KLDvglm" ] }, { "page": "kumar", "title": "Kumaraswamy Regression Family Function", "topics": [ "kumar" ] }, { "page": "kumarUC", "title": "The Kumaraswamy Distribution", "topics": [ "dkumar", "Kumar", "pkumar", "qkumar", "rkumar" ] }, { "page": "lakeO", "title": "Annual catches on Lake Otamangakau from October 1974 to October 1989", "topics": [ "lakeO" ] }, { "page": "lambertW", "title": "The Lambert W Function", "topics": [ "lambertW" ] }, { "page": "laplace", "title": "Laplace Regression Family Function", "topics": [ "laplace" ] }, { "page": "laplaceUC", "title": "The Laplace Distribution", "topics": [ "dlaplace", "plaplace", "qlaplace", "rlaplace" ] }, { "page": "latvar", "title": "Latent Variables", "topics": [ "latvar", "lv" ] }, { "page": "leipnik", "title": "Leipnik Regression Family Function", "topics": [ "leipnik" ] }, { "page": "lerch", "title": "Lerch Phi Function", "topics": [ "lerch" ] }, { "page": "leukemia", "title": "Acute Myelogenous Leukemia Survival Data", "topics": [ "leukemia" ] }, { "page": "levy", "title": "Levy Distribution Family Function", "topics": [ "levy" ] }, { "page": "lgammaff", "title": "Log-gamma Distribution Family Function", "topics": [ "lgamma1", "lgamma3" ] }, { "page": "lgammaUC", "title": "The Log-Gamma Distribution", "topics": [ "dlgamma", "lgammaUC", "plgamma", "qlgamma", "rlgamma" ] }, { "page": "lindley", "title": "1-parameter Lindley Distribution", "topics": [ "lindley" ] }, { "page": "lindUC", "title": "The Lindley Distribution", "topics": [ "dlind", "Lindley", "plind", "rlind" ] }, { "page": "linkfunvlm", "title": "Link Functions for VGLMs", "topics": [ "linkfun", "linkfunvlm" ] }, { "page": "Links", "title": "Link functions for VGLM/VGAM/etc. families", "topics": [ "Links", "TypicalVGAMlink" ] }, { "page": "lino", "title": "Generalized Beta Distribution Family Function", "topics": [ "lino" ] }, { "page": "linoUC", "title": "The Generalized Beta Distribution (Libby and Novick, 1982)", "topics": [ "dlino", "Lino", "plino", "qlino", "rlino" ] }, { "page": "lirat", "title": "Low-iron Rat Teratology Data", "topics": [ "lirat" ] }, { "page": "lms.bcg", "title": "LMS Quantile Regression with a Box-Cox transformation to a Gamma Distribution", "topics": [ "lms.bcg" ] }, { "page": "lms.bcn", "title": "LMS Quantile Regression with a Box-Cox Transformation to Normality", "topics": [ "lms.bcn" ] }, { "page": "lms.yjn", "title": "LMS Quantile Regression with a Yeo-Johnson Transformation to Normality", "topics": [ "lms.yjn", "lms.yjn2" ] }, { "page": "logUC", "title": "Logarithmic Distribution", "topics": [ "dlog", "Log", "plog", "qlog", "rlog" ] }, { "page": "log1mexp", "title": "Logarithms with an Unit Offset and Exponential Term", "topics": [ "log1mexp", "log1pexp" ] }, { "page": "logclink", "title": "Complementary-log Link Function", "topics": [ "logclink" ] }, { "page": "logF", "title": "Natural Exponential Family Generalized Hyperbolic Secant Distribution Family Function", "topics": [ "logF" ] }, { "page": "logff", "title": "Logarithmic Distribution", "topics": [ "logff" ] }, { "page": "logistic", "title": "Logistic Distribution Family Function", "topics": [ "logistic", "logistic1" ] }, { "page": "logitlink", "title": "Logit Link Function", "topics": [ "extlogitlink", "logitlink" ] }, { "page": "logitoffsetlink", "title": "Logit-with-an-Offset Link Function", "topics": [ "logitoffsetlink" ] }, { "page": "logLikvlm", "title": "Extract Log-likelihood for VGLMs/VGAMs/etc.", "topics": [ "logLik.vlm" ] }, { "page": "loglinb2", "title": "Loglinear Model for Two Binary Responses", "topics": [ "loglinb2" ] }, { "page": "loglinb3", "title": "Loglinear Model for Three Binary Responses", "topics": [ "loglinb3" ] }, { "page": "loglinb4", "title": "Loglinear Model for Four Binary Responses", "topics": [ "loglinb4" ] }, { "page": "loglink", "title": "Log Link Function, and Variants", "topics": [ "loglink", "logneglink", "negloglink" ] }, { "page": "logloglink", "title": "Log-log and Log-log-log Link Functions", "topics": [ "loglog", "logloglink", "loglogloglink" ] }, { "page": "lognormal", "title": "Lognormal Distribution", "topics": [ "lognormal" ] }, { "page": "logofflink", "title": "Log Link Function with an Offset", "topics": [ "log1plink", "logofflink" ] }, { "page": "lomax", "title": "Lomax Distribution Family Function", "topics": [ "lomax" ] }, { "page": "lomaxUC", "title": "The Lomax Distribution", "topics": [ "dlomax", "Lomax", "plomax", "qlomax", "rlomax" ] }, { "page": "lpossums", "title": "Leadbeater's Possums", "topics": [ "lpossums" ] }, { "page": "lqnorm", "title": "Minimizing the L-q norm Family Function", "topics": [ "lqnorm" ] }, { "page": "lrt.stat", "title": "Likelihood Ratio Test Statistics Evaluated at the Null Values", "topics": [ "lrt.stat", "lrt.stat.vlm" ] }, { "page": "lrtest", "title": "Likelihood Ratio Test of Nested Models", "topics": [ "lrtest", "lrtest_vglm" ] }, { "page": "lvplot", "title": "Latent Variable Plot", "topics": [ "lvplot" ] }, { "page": "lvplot.qrrvglm", "title": "Latent Variable Plot for QO models", "topics": [ "lvplot.qrrvglm" ] }, { "page": "lvplot.rrvglm", "title": "Latent Variable Plot for RR-VGLMs", "topics": [ "biplot.rrvglm", "lvplot.rrvglm" ] }, { "page": "machinists", "title": "Machinists Accidents", "topics": [ "machinists" ] }, { "page": "makeham", "title": "Makeham Regression Family Function", "topics": [ "makeham" ] }, { "page": "makehamUC", "title": "The Makeham Distribution", "topics": [ "dmakeham", "Makeham", "pmakeham", "qmakeham", "rmakeham" ] }, { "page": "margeff", "title": "Marginal Effects for Several Categorical Response Models", "topics": [ "margeff" ] }, { "page": "marital.nz", "title": "New Zealand Marital Data", "topics": [ "marital.nz" ] }, { "page": "Max", "title": "Maximums", "topics": [ "Max" ] }, { "page": "maxwell", "title": "Maxwell Regression Family Function", "topics": [ "maxwell" ] }, { "page": "maxwellUC", "title": "The Maxwell Distribution", "topics": [ "dmaxwell", "Maxwell", "pmaxwell", "qmaxwell", "rmaxwell" ] }, { "page": "mccullagh89", "title": "McCullagh (1989) Distribution Family Function", "topics": [ "mccullagh89" ] }, { "page": "meangaitd", "title": "Mean of the GAITD Combo Density", "topics": [ "meangaitd" ] }, { "page": "melbmaxtemp", "title": "Melbourne Daily Maximum Temperatures", "topics": [ "melbmaxtemp" ] }, { "page": "meplot", "title": "Mean Excess Plot", "topics": [ "meplot", "meplot.default", "meplot.vlm" ] }, { "page": "micmen", "title": "Michaelis-Menten Model", "topics": [ "micmen" ] }, { "page": "mills.ratio", "title": "Mills Ratio", "topics": [ "mills.ratio", "mills.ratio2" ] }, { "page": "mix2exp", "title": "Mixture of Two Exponential Distributions", "topics": [ "mix2exp" ] }, { "page": "mix2normal", "title": "Mixture of Two Univariate Normal Distributions", "topics": [ "mix2normal" ] }, { "page": "mix2poisson", "title": "Mixture of Two Poisson Distributions", "topics": [ "mix2poisson" ] }, { "page": "MNSs", "title": "The MNSs Blood Group System", "topics": [ "MNSs" ] }, { "page": "model.framevlm", "title": "Construct the Model Frame of a VLM Object", "topics": [ "model.frame.vlm", "model.framevlm" ] }, { "page": "model.matrixqrrvglm", "title": "Construct the Model Matrix of a QRR-VGLM Object", "topics": [ "model.matrixqrrvglm" ] }, { "page": "model.matrixvlm", "title": "Construct the Design Matrix of a VLM Object", "topics": [ "model.matrixvlm" ] }, { "page": "moffset", "title": "Matrix Offset", "topics": [ "moffset" ] }, { "page": "multilogitlink", "title": "Multi-logit Link Function", "topics": [ "multilogitlink" ] }, { "page": "multinomial", "title": "Multinomial Logit Model", "topics": [ "multinomial" ] }, { "page": "N1binomUC", "title": "Linear Model and Binomial Mixed Data Type Distribution", "topics": [ "dN1binom", "rN1binom" ] }, { "page": "N1binomial", "title": "Linear Model and Binomial Mixed Data Type Family Function", "topics": [ "N1binomial" ] }, { "page": "N1poisUC", "title": "Linear Model and Poisson Mixed Data Type Distribution", "topics": [ "dN1pois", "rN1pois" ] }, { "page": "N1poisson", "title": "Linear Model and Poisson Mixed Data Type Family Function", "topics": [ "N1poisson" ] }, { "page": "nakagami", "title": "Nakagami Regression Family Function", "topics": [ "nakagami" ] }, { "page": "nakagamiUC", "title": "Nakagami Distribution", "topics": [ "dnaka", "Nakagami", "pnaka", "qnaka", "rnaka" ] }, { "page": "nbcanlink", "title": "Negative Binomial Canonical Link Function", "topics": [ "nbcanlink" ] }, { "page": "negbinomial", "title": "Negative Binomial Distribution Family Function", "topics": [ "negbinomial", "polya", "polyaR" ] }, { "page": "negbinomial.size", "title": "Negative Binomial Distribution Family Function With Known Size", "topics": [ "negbinomial.size" ] }, { "page": "niters", "title": "Number of Iterations", "topics": [ "niters", "niters.vlm" ] }, { "page": "normal.vcm", "title": "Univariate Normal Distribution as a Varying-Coefficient Model", "topics": [ "normal.vcm" ] }, { "page": "nparamvglm", "title": "Number of Parameters", "topics": [ "nparam", "nparam.drrvglm", "nparam.qrrvglm", "nparam.rrvgam", "nparam.rrvglm", "nparam.vgam", "nparam.vlm" ] }, { "page": "olym", "title": "2008 and 2012 Summer Olympic Final Medal Count Data", "topics": [ "olym08", "olym12" ] }, { "page": "Opt", "title": "Optimums", "topics": [ "Opt" ] }, { "page": "ordpoisson", "title": "Ordinal Poisson Family Function", "topics": [ "ordpoisson" ] }, { "page": "ordsup", "title": "Ordinal Superiority Measures", "topics": [ "ordsup", "ordsup.vglm" ] }, { "page": "oxtemp", "title": "Oxford Temperature Data", "topics": [ "oxtemp" ] }, { "page": "paralogistic", "title": "Paralogistic Distribution Family Function", "topics": [ "paralogistic" ] }, { "page": "paralogisticUC", "title": "The Paralogistic Distribution", "topics": [ "dparalogistic", "Paralogistic", "pparalogistic", "qparalogistic", "rparalogistic" ] }, { "page": "ParetoUC", "title": "The Pareto Distribution", "topics": [ "dpareto", "Pareto", "ppareto", "qpareto", "rpareto" ] }, { "page": "paretoff", "title": "Pareto and Truncated Pareto Distribution Family Functions", "topics": [ "paretoff", "truncpareto" ] }, { "page": "paretoIV", "title": "Pareto(IV/III/II) Distribution Family Functions", "topics": [ "paretoII", "paretoIII", "paretoIV" ] }, { "page": "paretoIVUC", "title": "The Pareto(IV/III/II) Distributions", "topics": [ "dparetoI", "dparetoII", "dparetoIII", "dparetoIV", "ParetoI", "ParetoII", "ParetoIII", "ParetoIV", "pparetoI", "pparetoII", "pparetoIII", "pparetoIV", "qparetoI", "qparetoII", "qparetoIII", "qparetoIV", "rparetoI", "rparetoII", "rparetoIII", "rparetoIV" ] }, { "page": "perks", "title": "Perks Distribution Family Function", "topics": [ "perks" ] }, { "page": "perksUC", "title": "The Perks Distribution", "topics": [ "dperks", "Perks", "pperks", "qperks", "rperks" ] }, { "page": "persp.qrrvglm", "title": "Perspective plot for QRR-VGLMs", "topics": [ "perspqrrvglm" ] }, { "page": "pgamma.deriv", "title": "Derivatives of the Incomplete Gamma Integral", "topics": [ "pgamma.deriv" ] }, { "page": "pgamma.deriv.unscaled", "title": "Derivatives of the Incomplete Gamma Integral (Unscaled Version)", "topics": [ "pgamma.deriv.unscaled" ] }, { "page": "plotdeplot.lmscreg", "title": "Density Plot for LMS Quantile Regression", "topics": [ "plotdeplot.lmscreg" ] }, { "page": "plotdgaitd", "title": "Plotting the GAITD Combo Density from a GAITD Regression Object", "topics": [ "plotdgaitd", "plotdgaitd.vglm" ] }, { "page": "plotqrrvglm", "title": "Model Diagnostic Plots for QRR-VGLMs", "topics": [ "plotqrrvglm" ] }, { "page": "plotqtplot.lmscreg", "title": "Quantile Plot for LMS Quantile Regression", "topics": [ "plotqtplot.lmscreg" ] }, { "page": "plotrcim0", "title": "Main Effects Plot for a Row-Column Interaction Model (RCIM)", "topics": [ "plotrcim0" ] }, { "page": "plotvgam", "title": "Default VGAM Plotting", "topics": [ "plot.vgam", "plotvgam" ] }, { "page": "plotvgam.control", "title": "Control Function for plotvgam()", "topics": [ "plotvgam.control" ] }, { "page": "plotvglm", "title": "Plots for VGLMs", "topics": [ "plotvglm" ] }, { "page": "pneumo", "title": "Pneumoconiosis in Coalminers Data", "topics": [ "pneumo" ] }, { "page": "poisson.points", "title": "Poisson-points-on-a-plane/volume Distances Distribution", "topics": [ "poisson.points" ] }, { "page": "poissonff", "title": "Poisson Regression", "topics": [ "poissonff" ] }, { "page": "poisson.pointsUC", "title": "Poisson Points Distribution", "topics": [ "dpois.points", "PoissonPoints", "rpois.points" ] }, { "page": "polonoUC", "title": "The Poisson Lognormal Distribution", "topics": [ "dpolono", "Polono", "ppolono", "rpolono" ] }, { "page": "posbernoulli.b", "title": "Positive Bernoulli Family Function with Behavioural Effects", "topics": [ "posbernoulli.b" ] }, { "page": "posbernoulli.t", "title": "Positive Bernoulli Family Function with Time Effects", "topics": [ "posbernoulli.t" ] }, { "page": "posbernoulli.tb", "title": "Positive Bernoulli Family Function with Time and Behavioural Effects", "topics": [ "posbernoulli.tb" ] }, { "page": "posbernUC", "title": "Positive Bernoulli Sequence Model", "topics": [ "dposbern", "posbernUC", "rposbern" ] }, { "page": "posbinomial", "title": "Positive Binomial Distribution Family Function", "topics": [ "posbinomial" ] }, { "page": "posgeomUC", "title": "Positive-Geometric Distribution", "topics": [ "dposgeom", "Posgeom", "pposgeom", "qposgeom", "rposgeom" ] }, { "page": "posnegbinomial", "title": "Positive Negative Binomial Distribution Family Function", "topics": [ "posnegbinomial" ] }, { "page": "posnormUC", "title": "The Positive-Normal Distribution", "topics": [ "dposnorm", "Posnorm", "pposnorm", "qposnorm", "rposnorm" ] }, { "page": "posnormal", "title": "Positive Normal Distribution Family Function", "topics": [ "posnormal" ] }, { "page": "pospoisson", "title": "Positive Poisson Distribution Family Function", "topics": [ "pospoisson" ] }, { "page": "powerlink", "title": "Power Link Function", "topics": [ "powerlink" ] }, { "page": "prats", "title": "Pregnant Rats Toxological Experiment Data", "topics": [ "prats" ] }, { "page": "predictqrrvglm", "title": "Predict Method for a CQO fit", "topics": [ "predictqrrvglm" ] }, { "page": "predictvglm", "title": "Predict Method for a VGLM fit", "topics": [ "predictvglm" ] }, { "page": "prentice74", "title": "Prentice (1974) Log-gamma Distribution", "topics": [ "prentice74" ] }, { "page": "prinia", "title": "Yellow-bellied Prinia", "topics": [ "prinia" ] }, { "page": "probitlink", "title": "Probit Link Function", "topics": [ "probitlink" ] }, { "page": "profilevglm", "title": "Method for Profiling vglm Objects", "topics": [ "profilevglm" ] }, { "page": "propodds", "title": "Proportional Odds Model for Ordinal Regression", "topics": [ "propodds" ] }, { "page": "prplot", "title": "Probability Plots for Categorical Data Analysis", "topics": [ "prplot", "prplot.control" ] }, { "page": "put.smart", "title": "Adds a List to the End of the List ``.smart.prediction''", "topics": [ "put.smart" ] }, { "page": "qrrvglm.control", "title": "Control Function for QRR-VGLMs (CQO)", "topics": [ "qrrvglm.control" ] }, { "page": "qtplot.gumbel", "title": "Quantile Plot for Gumbel Regression", "topics": [ "qtplot.gumbel", "qtplot.gumbelff" ] }, { "page": "qtplot.lmscreg", "title": "Quantile Plot for LMS Quantile Regression", "topics": [ "qtplot.lmscreg" ] }, { "page": "qvar", "title": "Quasi-variances Extraction Function", "topics": [ "qvar" ] }, { "page": "QvarUC", "title": "Quasi-variances Preprocessing Function", "topics": [ "Qvar" ] }, { "page": "R2latvar", "title": "R-squared for Latent Variable Models", "topics": [ "R2latvar" ] }, { "page": "Rank", "title": "Rank", "topics": [ "Rank", "Rank.qrrvglm", "Rank.rrvgam", "Rank.rrvglm" ] }, { "page": "rayleigh", "title": "Rayleigh Regression Family Function", "topics": [ "cens.rayleigh", "rayleigh" ] }, { "page": "rayleighUC", "title": "Rayleigh Distribution", "topics": [ "drayleigh", "prayleigh", "qrayleigh", "Rayleigh", "rrayleigh" ] }, { "page": "Rcim", "title": "Mark the Baseline of Row and Column on a Matrix data", "topics": [ "Rcim" ] }, { "page": "rcqo", "title": "Constrained Quadratic Ordination", "topics": [ "rcqo" ] }, { "page": "rdiric", "title": "The Dirichlet distribution", "topics": [ "rdiric" ] }, { "page": "rec.exp1", "title": "Upper Record Values from a 1-parameter Exponential Distribution", "topics": [ "rec.exp1" ] }, { "page": "rec.normal", "title": "Upper Record Values from a Univariate Normal Distribution", "topics": [ "rec.normal" ] }, { "page": "reciprocallink", "title": "Reciprocal Link Function", "topics": [ "negreciprocallink", "reciprocallink" ] }, { "page": "residualsvglm", "title": "Residuals for a VGLM fit", "topics": [ "residualsvglm" ] }, { "page": "rhobitlink", "title": "Rhobit Link Function", "topics": [ "rhobitlink" ] }, { "page": "riceUC", "title": "The Rice Distribution", "topics": [ "drice", "price", "qrice", "Rice", "rrice" ] }, { "page": "riceff", "title": "Rice Distribution Family Function", "topics": [ "riceff" ] }, { "page": "rigff", "title": "Reciprocal Inverse Gaussian distribution", "topics": [ "rigff" ] }, { "page": "rlplot.gevff", "title": "Return Level Plot for GEV Fits", "topics": [ "rlplot.gev", "rlplot.gevff" ] }, { "page": "rootogram4vglm", "title": "Rootograms (S4 generic) for Assessing Goodness of Fit of Probability Models", "topics": [ "rootogram4", "rootogram4vglm" ] }, { "page": "round2", "title": "Rounding of Numbers to Base 2", "topics": [ "round2" ] }, { "page": "rrar", "title": "Nested Reduced-rank Autoregressive Models for Multiple Time Series", "topics": [ "rrar" ] }, { "page": "rrvglm", "title": "Fitting Reduced-Rank Vector Generalized Linear Models (RR-VGLMs) and Doubly Constrained RR-VGLMs (DRR-VGLMs)", "concept": [ "Reduced-Rank Vector Generalized Linear Model", "Reduced-rank regression" ], "topics": [ "rrvglm" ] }, { "page": "rrvglm-class", "title": "Class ``rrvglm''", "concept": [ "Reduced-Rank Vector Generalized Linear Model" ], "topics": [ "rrvglm-class" ] }, { "page": "rrvglm.control", "title": "Control Function for rrvglm()", "concept": [ "Reduced-Rank Vector Generalized Linear Model" ], "topics": [ "rrvglm.control" ] }, { "page": "rrvglm.optim.control", "title": "Control Function for rrvglm() Calling optim()", "concept": [ "Reduced-Rank Vector Generalized Linear Model" ], "topics": [ "rrvglm.optim.control" ] }, { "page": "ruge", "title": "Rutherford-Geiger Polonium Data", "topics": [ "ruge" ] }, { "page": "s", "title": "Defining Smooths in VGAM Formulas", "topics": [ "s" ] }, { "page": "sc.studentt2", "title": "Scaled Student t Distribution with 2 df Family Function", "topics": [ "sc.studentt2" ] }, { "page": "score.stat", "title": "Rao's Score Test Statistics Evaluated at the Null Values", "topics": [ "score.stat", "score.stat.vlm" ] }, { "page": "seglines", "title": "Hauck-Donner Effects: Segmented Lines Plot", "topics": [ "seglines" ] }, { "page": "Select", "title": "Select Variables for a Formula Response or the RHS of a Formula", "topics": [ "Select", "subsetcol" ] }, { "page": "seq2binomial", "title": "The Two-stage Sequential Binomial Distribution Family Function", "topics": [ "seq2binomial" ] }, { "page": "setup.smart", "title": "Smart Prediction Setup", "topics": [ "setup.smart" ] }, { "page": "simplex", "title": "Simplex Distribution Family Function", "topics": [ "simplex" ] }, { "page": "simplexUC", "title": "Simplex Distribution", "topics": [ "dsimplex", "rsimplex" ] }, { "page": "simulate.vlm", "title": "Simulate Responses for VGLMs and VGAMs", "topics": [ "simulate.vlm" ] }, { "page": "sinmad", "title": "Singh-Maddala Distribution Family Function", "topics": [ "sinmad" ] }, { "page": "sinmadUC", "title": "The Singh-Maddala Distribution", "topics": [ "dsinmad", "psinmad", "qsinmad", "rsinmad", "Sinmad" ] }, { "page": "skellam", "title": "Skellam Distribution Family Function", "topics": [ "skellam" ] }, { "page": "skellamUC", "title": "The Skellam Distribution", "topics": [ "dskellam", "rskellam", "Skellam" ] }, { "page": "skewnormUC", "title": "Skew-Normal Distribution", "topics": [ "dskewnorm", "rskewnorm", "skewnorm" ] }, { "page": "skewnormal", "title": "Univariate Skew-Normal Distribution Family Function", "topics": [ "skewnormal" ] }, { "page": "slash", "title": "Slash Distribution Family Function", "topics": [ "slash" ] }, { "page": "slashUC", "title": "Slash Distribution", "topics": [ "dslash", "pslash", "rslash", "Slash" ] }, { "page": "sloglink", "title": "Square root-Log Link Mixtures", "topics": [ "lcsloglink", "sloglink" ] }, { "page": "sm.os", "title": "Defining O'Sullivan Spline Smooths in VGAM Formulas", "topics": [ "sm.os" ] }, { "page": "sm.ps", "title": "Defining Penalized Spline Smooths in VGAM Formulas", "topics": [ "sm.ps" ] }, { "page": "smart.expression", "title": "S Expression for Smart Functions", "topics": [ "smart.expression" ] }, { "page": "smart.mode.is", "title": "Determine What Mode the Smart Prediction is In", "topics": [ "smart.mode.is" ] }, { "page": "smartpred", "title": "Smart Prediction", "topics": [ "sm.bs", "sm.ns", "sm.poly", "sm.scale", "sm.scale.default", "smartpred" ] }, { "page": "specialsvglm", "title": "Special Values or Quantities in a Fitted Object", "topics": [ "specials", "specialsvglm" ] }, { "page": "spikeplot", "title": "Spike Plot", "topics": [ "spikeplot" ] }, { "page": "foldsqrtlink", "title": "Square Root and Folded Square Root Link Functions", "topics": [ "foldsqrtlink", "sqrtlink" ] }, { "page": "sratio", "title": "Ordinal Regression with Stopping Ratios", "topics": [ "sratio" ] }, { "page": "step4vglm", "title": "Choose a model by AIC in a Stepwise Algorithm", "topics": [ "step4", "step4vglm" ] }, { "page": "studentt", "title": "Student t Distribution", "topics": [ "studentt", "studentt2", "studentt3" ] }, { "page": "summarydrrvglm", "title": "Summarizing Reduced Rank Vector Generalized Linear Model (RR-VGLM) and Doubly constrained RR-VGLM Fits", "topics": [ "show.summary.drrvglm", "show.summary.rrvglm", "summary.drrvglm", "summary.rrvglm" ] }, { "page": "summarypvgam", "title": "Summarizing Penalized Vector Generalized Additive Model Fits", "topics": [ "show.summary.pvgam", "summarypvgam" ] }, { "page": "summaryvgam", "title": "Summarizing Vector Generalized Additive Model Fits", "topics": [ "show.summary.vgam", "summaryvgam" ] }, { "page": "summaryvglm", "title": "Summarizing Vector Generalized Linear Model Fits", "topics": [ "show.summary.vglm", "summary.vglm", "summaryvglm" ] }, { "page": "SURff", "title": "Seemingly Unrelated Regressions Family Function", "topics": [ "SURff" ] }, { "page": "SurvS4", "title": "Create a Survival Object", "topics": [ "as.character.SurvS4", "as.data.frame.SurvS4", "format.SurvS4", "is.na.SurvS4", "is.SurvS4", "Math.SurvS4", "Ops.SurvS4", "show.SurvS4", "Summary.SurvS4", "SurvS4", "[.SurvS4" ] }, { "page": "SurvS4-class", "title": "Class \"SurvS4\"", "topics": [ "show,SurvS4-method", "SurvS4-class" ] }, { "page": "TICvlm", "title": "Takeuchi's Information Criterion", "topics": [ "TIC", "TICvlm" ] }, { "page": "tobit", "title": "Tobit Regression", "topics": [ "tobit" ] }, { "page": "tobitUC", "title": "The Tobit Distribution", "topics": [ "dtobit", "ptobit", "qtobit", "rtobit", "Tobit" ] }, { "page": "Tol", "title": "Tolerances", "topics": [ "Tol" ] }, { "page": "topple", "title": "Topp-Leone Distribution Family Function", "topics": [ "topple" ] }, { "page": "toppleUC", "title": "The Topp-Leone Distribution", "topics": [ "dtopple", "ptopple", "qtopple", "rtopple", "Topple" ] }, { "page": "toxop", "title": "Toxoplasmosis Data", "topics": [ "toxop" ] }, { "page": "triangleUC", "title": "The Triangle Distribution", "topics": [ "dtriangle", "ptriangle", "qtriangle", "rtriangle", "Triangle" ] }, { "page": "trim.constraints", "title": "Trimmed Constraint Matrices", "topics": [ "trim.constraints" ] }, { "page": "trinormalUC", "title": "Trivariate Normal Distribution Density and Random Variates", "topics": [ "dtrinorm", "rtrinorm", "Trinorm" ] }, { "page": "trinormal", "title": "Trivariate Normal Distribution Family Function", "topics": [ "trinormal" ] }, { "page": "trplot", "title": "Trajectory Plot", "topics": [ "trplot" ] }, { "page": "trplot.qrrvglm", "title": "Trajectory plot for QRR-VGLMs", "topics": [ "trplot.qrrvglm" ] }, { "page": "Trunc", "title": "Truncated Values for the GT-Expansion Method", "topics": [ "Trunc" ] }, { "page": "truncparetoUC", "title": "The Truncated Pareto Distribution", "topics": [ "dtruncpareto", "ptruncpareto", "qtruncpareto", "rtruncpareto", "Truncpareto" ] }, { "page": "truncweibull", "title": "Truncated Weibull Distribution Family Function", "topics": [ "truncweibull" ] }, { "page": "ucberk", "title": "University California Berkeley Graduate Admissions", "topics": [ "ucberk" ] }, { "page": "uninormal", "title": "Univariate Normal Distribution", "topics": [ "gaussianff", "uninormal" ] }, { "page": "UtilitiesVGAM", "title": "Utility Functions for the VGAM Package", "topics": [ "dimm", "interleave.VGAM", 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